Navid Afkhami wrote on 11 Feb 12:54 +0100
(address . guix-patches@gnu.org)(name . Navid Afkhami)(address . navid.afkhami@mdc-berlin.de)
ad07d6de26d73e79b53db947bc5ed2045283afc6.1739274867.git.navid.afkhami@mdc-berlin.de
Change-Id: Id40d7d18c644c112500fed68c22633b33195e899
---
gnu/packages/bioinformatics.scm | 107 ++++++++++++++++----------------
1 file changed, 54 insertions(+), 53 deletions(-)
Toggle diff (126 lines)
diff --git a/gnu/packages/bioinformatics.scm b/gnu/packages/bioinformatics.scm
index 6b2e552585..a1690392af 100644
--- a/gnu/packages/bioinformatics.scm
+++ b/gnu/packages/bioinformatics.scm
@@ -856,63 +856,64 @@ (define-public r-bedtorch
(license license:expat))))
(define-public r-bpcells
- (package
- (name "r-bpcells")
- (version "0.3.0")
- (source
- (origin
- (method git-fetch)
- (uri (git-reference
- (url "https://github.com/bnprks/BPCells")
- (commit (string-append "v" version))))
- (file-name (git-file-name name version))
- (sha256
- (base32 "12h1di45fg06nhsliii7v0h1z567pkpis1xm4ar1qr8ns1n8iljw"))))
- (properties `((upstream-name . "BPCells")))
- (build-system r-build-system)
- (arguments
- (list
- #:phases
- '(modify-phases %standard-phases
- (add-after 'unpack 'chdir
- (lambda _ (chdir "r"))))))
- (propagated-inputs
- (list r-dplyr
- r-ggplot2
- r-ggrepel
- r-hexbin
- r-lifecycle
- r-magrittr
- r-matrix
- r-patchwork
- r-rcolorbrewer
- r-rcpp
- r-rcppeigen
- r-readr
- r-rlang
- r-scales
- r-scattermore
- r-stringr
- r-tibble
- r-tidyr
- r-vctrs
+ (let ((commit "966820b8da473ad2d4fc85354f280d926364abb7")
+ (revision "1"))
+ (package
+ (name "r-bpcells")
+ (version (git-version "0.3.0" revision commit))
+ (source
+ (origin
+ (method git-fetch)
+ (uri (git-reference
+ (url "https://github.com/bnprks/BPCells")
+ (commit commit)))
+ (file-name (git-file-name name version))
+ (sha256
+ (base32 "1ig23cqsycgp96x71y6504vkd1sjjpl05vvi7ikly32rvij94nph"))))
+ (properties `((upstream-name . "BPCells")))
+ (build-system r-build-system)
+ (arguments
+ (list
+ #:phases '(modify-phases %standard-phases
+ (add-after 'unpack 'chdir
+ (lambda _
+ (chdir "r"))))))
+ (propagated-inputs (list r-dplyr
+ r-ggplot2
+ r-ggrepel
+ r-hexbin
+ r-lifecycle
+ r-magrittr
+ r-matrix
+ r-patchwork
+ r-rcolorbrewer
+ r-rcpp
+ r-rcppeigen
+ r-readr
+ r-rlang
+ r-scales
+ r-scattermore
+ r-stringr
+ r-tibble
+ r-tidyr
+ r-vctrs
- ;; Suggested packages
- r-genomicranges
- r-igraph
- r-iranges
- r-matrixstats))
- (inputs (list hdf5 zlib))
- (native-inputs (list pkg-config))
- (home-page "https://github.com/bnprks/BPCells")
- (synopsis "Single cell counts matrices to PCA")
- (description
- "This is a package providing efficient operations for single cell
+ ;; Suggested packages
+ r-genomicranges
+ r-igraph
+ r-iranges
+ r-matrixstats))
+ (inputs (list hdf5 zlib))
+ (native-inputs (list pkg-config))
+ (home-page "https://github.com/bnprks/BPCells")
+ (synopsis "Single cell counts matrices to PCA")
+ (description
+ "This is a package providing efficient operations for single cell
ATAC-seq fragments and RNA counts matrices. It is interoperable with standard
file formats, and introduces efficient bit-packed formats that allow large
storage savings and increased read speeds.")
- ;; Either license
- (license (list license:asl2.0 license:expat))))
+ ;; Either license
+ (license (list license:asl2.0 license:expat)))))
(define-public r-btools
(let ((commit "fa21d4ca01d37ea4d98b45582453f3bf95cbc2b5")
base-commit: 23c39e0d1bff210c3bea35cc666a4421c5d1f165
--
2.43.0