python-pytorch build failure due to libgpg-error update

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2 participants
  • Ludovic Courtès
  • Rostislav Svoboda
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Rostislav Svoboda
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Rostislav Svoboda wrote 2 months ago
(address . bug-guix@gnu.org)(name . Ludovic Courtès)(address . ludo@gnu.org)
CAEtmmez=E0+eGkgZudw+DkhHAyXR1RPrbFfWf8Mpd9qiLHon2w@mail.gmail.com
Hello, the following commit:
eec2c5d6a7 2024-12-29 gnu: libgpg-error: Update to 1.51.
causes guix build python-pytorch to fail. Below are the last few lines
from the build log; the full build log is attached.

Cheers,
Bost


cd /tmp/guix-build-eigen-3.4.0.drv-0/build/test &&
/gnu/store/78wn2hb9q46xg5pa4m2zvigs3n4nqznw-cmake-minimal-3.24.2/bin/cmake
-E cmake_link_script CMakeFiles/mixingtypes_6.dir/link.txt --verbose=1
/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin/c++
-std=c++03 -pedantic -Wall -Wextra -Wundef -Wcast-align
-Wchar-subscripts -Wnon-virtual-dtor -Wunused-local-typedefs
-Wpointer-arith -Wwrite-strings -Wformat-security -Wlogical-op
-Wenum-conversion -Wdouble-promotion -Wshadow -Wno-psabi
-Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common
-fstrict-aliasing -ansi -O3 -DNDEBUG
CMakeFiles/mixingtypes_6.dir/mixingtypes.cpp.o -o mixingtypes_6
make[3]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
[ 21%] Built target mixingtypes_6
[ 21%] Linking CXX executable mixingtypes_3
cd /tmp/guix-build-eigen-3.4.0.drv-0/build/test &&
/gnu/store/78wn2hb9q46xg5pa4m2zvigs3n4nqznw-cmake-minimal-3.24.2/bin/cmake
-E cmake_link_script CMakeFiles/mixingtypes_3.dir/link.txt --verbose=1
/gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin/c++
-std=c++03 -pedantic -Wall -Wextra -Wundef -Wcast-align
-Wchar-subscripts -Wnon-virtual-dtor -Wunused-local-typedefs
-Wpointer-arith -Wwrite-strings -Wformat-security -Wlogical-op
-Wenum-conversion -Wdouble-promotion -Wshadow -Wno-psabi
-Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common
-fstrict-aliasing -ansi -O3 -DNDEBUG
CMakeFiles/mixingtypes_3.dir/mixingtypes.cpp.o -o mixingtypes_3
make[3]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
[ 21%] Built target mixingtypes_3
make[2]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
make[1]: *** [CMakeFiles/Makefile2:3501: CMakeFiles/buildtests.dir/rule] Error 2
make[1]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
make: *** [Makefile:182: buildtests] Error 2
error: in phase 'check': uncaught exception:
%exception #<&invoke-error program: "make" arguments: ("buildtests"
"-j24") exit-status: 2 term-signal: #f stop-signal: #f>
phase `check' failed after 92.2 seconds
command "make" "buildtests" "-j24" failed with status 2
build process 18 exited with status 256
builder for `/gnu/store/1dcg3vfmib2f63jib57g4hvj2k6cbf8i-eigen-3.4.0.drv'
failed with exit code 1
build of /gnu/store/1dcg3vfmib2f63jib57g4hvj2k6cbf8i-eigen-3.4.0.drv failed
View build log at
'/var/log/guix/drvs/1d/cg3vfmib2f63jib57g4hvj2k6cbf8i-eigen-3.4.0.drv.gz'.
cannot build derivation
`/gnu/store/92k9v3rdympz3djzayr67riah6axd5qq-python-pytorch-2.4.0.drv':
1 dependencies couldn't be built
guix build: error: build of
`/gnu/store/92k9v3rdympz3djzayr67riah6axd5qq-python-pytorch-2.4.0.drv'
failed
Attachment: cg3vfmib2f63jib57g4hvj2k6cbf8i-eigen-3.4.0.drv.gz
Ludovic Courtès wrote 1 months ago
(name . Rostislav Svoboda)(address . rostislav.svoboda@gmail.com)(address . 75589-done@debbugs.gnu.org)
871pwca1kv.fsf@gnu.org
Hi!

Rostislav Svoboda <rostislav.svoboda@gmail.com> skribis:

Toggle quote (5 lines)
> Hello, the following commit:
> eec2c5d6a7 2024-12-29 gnu: libgpg-error: Update to 1.51.
> causes guix build python-pytorch to fail. Below are the last few lines
> from the build log; the full build log is attached.

[...]

Toggle quote (40 lines)
> cd /tmp/guix-build-eigen-3.4.0.drv-0/build/test &&
> /gnu/store/78wn2hb9q46xg5pa4m2zvigs3n4nqznw-cmake-minimal-3.24.2/bin/cmake
> -E cmake_link_script CMakeFiles/mixingtypes_6.dir/link.txt --verbose=1
> /gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin/c++
> -std=c++03 -pedantic -Wall -Wextra -Wundef -Wcast-align
> -Wchar-subscripts -Wnon-virtual-dtor -Wunused-local-typedefs
> -Wpointer-arith -Wwrite-strings -Wformat-security -Wlogical-op
> -Wenum-conversion -Wdouble-promotion -Wshadow -Wno-psabi
> -Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common
> -fstrict-aliasing -ansi -O3 -DNDEBUG
> CMakeFiles/mixingtypes_6.dir/mixingtypes.cpp.o -o mixingtypes_6
> make[3]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
> [ 21%] Built target mixingtypes_6
> [ 21%] Linking CXX executable mixingtypes_3
> cd /tmp/guix-build-eigen-3.4.0.drv-0/build/test &&
> /gnu/store/78wn2hb9q46xg5pa4m2zvigs3n4nqznw-cmake-minimal-3.24.2/bin/cmake
> -E cmake_link_script CMakeFiles/mixingtypes_3.dir/link.txt --verbose=1
> /gnu/store/86fc8bi3mciljxz7c79jx8zr4wsx7xw8-gcc-11.4.0/bin/c++
> -std=c++03 -pedantic -Wall -Wextra -Wundef -Wcast-align
> -Wchar-subscripts -Wnon-virtual-dtor -Wunused-local-typedefs
> -Wpointer-arith -Wwrite-strings -Wformat-security -Wlogical-op
> -Wenum-conversion -Wdouble-promotion -Wshadow -Wno-psabi
> -Wno-variadic-macros -Wno-long-long -fno-check-new -fno-common
> -fstrict-aliasing -ansi -O3 -DNDEBUG
> CMakeFiles/mixingtypes_3.dir/mixingtypes.cpp.o -o mixingtypes_3
> make[3]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
> [ 21%] Built target mixingtypes_3
> make[2]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
> make[1]: *** [CMakeFiles/Makefile2:3501: CMakeFiles/buildtests.dir/rule] Error 2
> make[1]: Leaving directory '/tmp/guix-build-eigen-3.4.0.drv-0/build'
> make: *** [Makefile:182: buildtests] Error 2
> error: in phase 'check': uncaught exception:
> %exception #<&invoke-error program: "make" arguments: ("buildtests"
> "-j24") exit-status: 2 term-signal: #f stop-signal: #f>
> phase `check' failed after 92.2 seconds
> command "make" "buildtests" "-j24" failed with status 2
> build process 18 exited with status 256
> builder for `/gnu/store/1dcg3vfmib2f63jib57g4hvj2k6cbf8i-eigen-3.4.0.drv'
> failed with exit code 1

Note that it’s Eigen, not PyTorch itself that fails to build. We’re
missing the actual error message (perhaps if we scrolled up we’d see
a “No space left on device” error message because those C++ test
programs in Eigen take quite a bit of space) but it’s unlikely that it’s
due to libgpg-error because they’re only remotely connected:

Toggle snippet (11 lines)
$ guix graph --path python-pytorch libgpg-error
python-pytorch@2.5.1
python-expecttest@0.2.1-0.683b09a
poetry@1.8.4
python-dulwich@0.21.7
gnupg@2.4.7
libgpg-error@1.51
$ guix graph --path eigen libgpg-error
guix graph: error: no path from 'eigen@3.4.0' to 'libgpg-error@1.51'

The good news is that ‘python-pytorch’ is available right now:

Toggle snippet (18 lines)
$ guix weather python-pytorch
computing 1 package derivations for x86_64-linux...
looking for 1 store items on https://ci.guix.gnu.org...
https://ci.guix.gnu.org ☀
100.0% substitutes available (1 out of 1)
at least 100.9 MiB of nars (compressed)
263.1 MiB on disk (uncompressed)
2.817 seconds per request (2.8 seconds in total)
0.4 requests per second
^C
$ guix describe
Generation 335 Feb 04 2025 19:46:37 (current)
guix 9366217
repository URL: https://git.savannah.gnu.org/git/guix.git
branch: master
commit: 9366217997d759a4150cf5e44d83b947ac2028ab

Closing!

Ludo’.
Closed
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