(address . guix-patches@gnu.org)
68e858c9-cd7a-46c5-8c75-8cda71321e4c@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3cluster r-mlr3data r-mlr3filters
r-mlr3fselect
r-mlr3hyperband r-mlr3mbo r-mlr3tuningspaces r-mlr3viz, r-mlr3verse): New
variables.
[PATCH] gnu: Add r-mlr3cluster r-mlr3data r-mlr3filters r-mlr3fselect r-mlr3hyperband r-mlr3mbo, r-mlr3tuningspaces r-mlr3viz and r-mlr3verse.
- Done
Details
- 2 participants
- M?d?lin Ionel Patra?cu
- Ricardo Wurmus
- Owner
- unassigned
- Submitted by
- M?d?lin Ionel Patra?cu
- Severity
- normal
M
M
[PATCH 3/9] gnu: Add r-mlr3filters.
(address . 70827@debbugs.gnu.org)
89d3aa1246d02f741011e3e9f1d2daf270d71501.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3filters): New variable.
Change-Id: I94bd79843f5f35eeacb1ea788a76b63e9028f548
---
gnu/packages/cran.scm | 27 +++++++++++++++++++++++++++
1 file changed, 27 insertions(+)
Toggle diff (40 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 26ee9bca3e..123d792da7 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37799,6 +37799,33 @@ (define-public r-mlr3data
mlr3 is loaded.")
(license license:lgpl3)))
+(define-public r-mlr3filters
+ (package
+ (name "r-mlr3filters")
+ (version "0.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3filters" version))
+ (sha256
+ (base32 "16z359bc2li7f35xk4g08np3r2a3127avv0ak6bn9bywcs13z6bl"))))
+ (properties `((upstream-name . "mlr3filters")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-backports
+ r-checkmate
+ r-data-table
+ r-mlr3
+ r-mlr3misc
+ r-paradox
+ r-r6))
+ (home-page "https://mlr3filters.mlr-org.com")
+ (synopsis "Filter based feature selection for mlr3")
+ (description
+ "This package extends mlr3 with filter methods for feature selection. Besides
+standalone filter methods built-in methods of any machine-learning algorithm are
+supported. Partial scoring of multivariate filter methods is supported.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
--
2.41.0
M
[PATCH 2/9] gnu: Add r-mlr3data.
(address . 70827@debbugs.gnu.org)
3698e5b69fe46e0431f35acf8e0d2420583e3bf4.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3data): New variable.
Change-Id: I93bee828d1ac26da1146c853b4d88fbdec42905f
---
gnu/packages/cran.scm | 24 ++++++++++++++++++++++++
1 file changed, 24 insertions(+)
Toggle diff (37 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 0fd94e8cf1..26ee9bca3e 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37775,6 +37775,30 @@ (define-public r-mlr3cluster
"This package extends the mlr3 package with cluster analysis.")
(license license:lgpl3)))
+(define-public r-mlr3data
+ (package
+ (name "r-mlr3data")
+ (version "0.7.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3data" version))
+ (sha256
+ (base32 "04hwmj8cdszwgd845va26pgzdw0k4cm025zjrmp3fr7ypp73mirg"))))
+ (properties `((upstream-name . "mlr3data")))
+ (build-system r-build-system)
+ (home-page "https://github.com/mlr-org/mlr3data")
+ (synopsis "Collection of machine learning data Sets for mlr3")
+ (description
+ "This package provides a small collection of interesting and educational
+machine learning data sets which are used as examples in the mlr3 book Applied
+machine learning using mlr3 in R @url{https://mlr3book.mlr-org.com}, the use case
+gallery @url{https://mlr3gallery.mlr-org.com}, or in other examples. All data
+sets are properly preprocessed and ready to be analyzed by most machine learning
+algorithms. Data sets are automatically added to the dictionary of tasks if
+mlr3 is loaded.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
--
2.41.0
M
[PATCH 4/9] gnu: Add r-mlr3fselect.
(address . 70827@debbugs.gnu.org)
84bd31ab9f9c2175bba8d667c60f84b4a1f92d68.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3fselect): New variable.
Change-Id: I28ced76c34d99c864c09cbf7b92658fb7676b22c
---
gnu/packages/cran.scm | 30 ++++++++++++++++++++++++++++++
1 file changed, 30 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 123d792da7..459ad63c23 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37826,6 +37826,36 @@ (define-public r-mlr3filters
supported. Partial scoring of multivariate filter methods is supported.")
(license license:lgpl3)))
+(define-public r-mlr3fselect
+ (package
+ (name "r-mlr3fselect")
+ (version "0.12.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3fselect" version))
+ (sha256
+ (base32 "1f18y4ahnjzlwk9pfs87i80kb6z84hgyc5cdlj3mafawq790hg1h"))))
+ (properties `((upstream-name . "mlr3fselect")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bbotk
+ r-checkmate
+ r-data-table
+ r-lgr
+ r-mlr3
+ r-mlr3misc
+ r-paradox
+ r-r6))
+ (home-page "https://mlr3fselect.mlr-org.com")
+ (synopsis "Feature selection for mlr3")
+ (description
+ "This package is a feature selection package of the mlr3 ecosystem. It
+selects the optimal feature set for any mlr3 learner. The package works with
+several optimization algorithms e.g. random search, Recursive feature elimination,
+and genetic search. Moreover, it can automatically optimize learners and estimate
+the performance of optimized feature sets with nested resampling.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
--
2.41.0
M
[PATCH 5/9] gnu: Add r-mlr3hyperband.
(address . 70827@debbugs.gnu.org)
4be2d0771f4fd6410a8510a2ff71ba1af0d2bf19.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3hyperband): New variable.
Change-Id: I3e7a829da1f7687ef0bb201f6333bdd519cfa025
---
gnu/packages/cran.scm | 31 +++++++++++++++++++++++++++++++
1 file changed, 31 insertions(+)
Toggle diff (44 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 459ad63c23..399225445b 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37856,6 +37856,37 @@ (define-public r-mlr3fselect
the performance of optimized feature sets with nested resampling.")
(license license:lgpl3)))
+(define-public r-mlr3hyperband
+ (package
+ (name "r-mlr3hyperband")
+ (version "0.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3hyperband" version))
+ (sha256
+ (base32 "1x6vfhadxlb4c9q61d5qv957mkyfwdwchzbg3flfd0j28b4bck1p"))))
+ (properties `((upstream-name . "mlr3hyperband")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bbotk
+ r-checkmate
+ r-data-table
+ r-lgr
+ r-mlr3
+ r-mlr3misc
+ r-mlr3tuning
+ r-paradox
+ r-r6))
+ (home-page "https://mlr3hyperband.mlr-org.com")
+ (synopsis "Hyperband for mlr3")
+ (description
+ "This package implements a successive halving and hyperband optimization
+algorithm for the mlr3 ecosystem. The implementation in mlr3hyperband features
+improved scheduling and parallelizes the evaluation of configurations. The package
+includes tuners for hyperparameter optimization in mlr3tuning and optimizers for
+black-box optimization in bbotk.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
--
2.41.0
M
[PATCH 1/9] gnu: Add r-mlr3cluster.
(address . 70827@debbugs.gnu.org)
b63173056e8d0cee3560f18f95d1ee7ad3edeccb.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3cluster): New variable.
Change-Id: I3d970afeeaf4de1793974177bcf5abf64c957d6b
---
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
Toggle diff (43 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 65e48e3445..0fd94e8cf1 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37747,6 +37747,34 @@ (define-public r-mlrmbo
customization by the user.")
(license license:bsd-2)))
+(define-public r-mlr3cluster
+ (package
+ (name "r-mlr3cluster")
+ (version "0.1.9")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3cluster" version))
+ (sha256
+ (base32 "09fsw2b43f9m7clv1qwylimyz622snhn9ykq3xwbiric7zr4ca91"))))
+ (properties `((upstream-name . "mlr3cluster")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-backports
+ r-checkmate
+ r-clue
+ r-cluster
+ r-data-table
+ r-fpc
+ r-mlr3
+ r-mlr3misc
+ r-paradox
+ r-r6))
+ (home-page "https://mlr3cluster.mlr-org.com")
+ (synopsis "Cluster extension for mlr3")
+ (description
+ "This package extends the mlr3 package with cluster analysis.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
base-commit: 00aa6b5a3c1505b033d19c6d3a3021d6d6ecb31b
--
2.41.0
M
[PATCH 6/9] gnu: Add r-mlr3mbo.
(address . 70827@debbugs.gnu.org)
a1621e9fc3303207d2b0ca2f5bdb651e07e73cd3.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3mbo): New variable.
Change-Id: I23d7af239f7ab55599faf99d5136621cc45c973f
---
gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
Toggle diff (49 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 399225445b..d1fc4cbb2f 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -37887,6 +37887,42 @@ (define-public r-mlr3hyperband
black-box optimization in bbotk.")
(license license:lgpl3)))
+(define-public r-mlr3mbo
+ (package
+ (name "r-mlr3mbo")
+ (version "0.2.2")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3mbo" version))
+ (sha256
+ (base32 "0jdj5dx6jb7n0g950h0j8jhafdj5mcalv5vxfiyf07myr6mjipri"))))
+ (properties `((upstream-name . "mlr3mbo")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bbotk
+ r-checkmate
+ r-data-table
+ r-lgr
+ r-mlr3
+ r-mlr3misc
+ r-mlr3tuning
+ r-paradox
+ r-r6
+ r-spacefillr))
+ (native-inputs (list r-knitr))
+ (home-page "https://mlr3mbo.mlr-org.com")
+ (synopsis "Flexible Bayesian optimization")
+ (description
+ "This package provides a flexible approach to Bayesian optimization / model
+based optimization building on the bbotk package. The mlr3mbo is a toolbox
+providing both ready-to-use optimization algorithms as well as their fundamental
+building blocks allowing for straightforward implementation of custom algorithms.
+Single- and multi-objective optimization is supported as well as mixed continuous,
+categorical and conditional search spaces. Moreover, using mlr3mbo for
+hyperparameter optimization of machine learning models within the mlr3 ecosystem
+is straightforward via mlr3tuning.")
+ (license license:lgpl3)))
+
(define-public r-mlr3measures
(package
(name "r-mlr3measures")
--
2.41.0
M
[PATCH 7/9] gnu: Add r-mlr3tuningspaces.
(address . 70827@debbugs.gnu.org)
3a9b2dc2ba0d9693958cb79b6561d06828529dc2.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3tuningspaces): New variable.
Change-Id: Ifb35e78dab862921f000b055d3fa1eee3ef79309
---
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
Toggle diff (41 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index d1fc4cbb2f..6fcf0eb10d 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38031,6 +38031,34 @@ (define-public r-mlr3ordinal
performing ordinal regression.")
(license license:expat))))
+(define-public r-mlr3tuningspaces
+ (package
+ (name "r-mlr3tuningspaces")
+ (version "0.5.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3tuningspaces" version))
+ (sha256
+ (base32 "1snrd7xq388mvqh0ydaxvx8k9iwp40g06c3irp0m718jw3wsz5vm"))))
+ (properties `((upstream-name . "mlr3tuningspaces")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-checkmate
+ r-data-table
+ r-mlr3
+ r-mlr3misc
+ r-mlr3tuning
+ r-paradox
+ r-r6))
+ (home-page "https://mlr3tuningspaces.mlr-org.com")
+ (synopsis "Search spaces for mlr3")
+ (description
+ "This package is a collection of search spaces for hyperparameter optimization
+in the mlr3 ecosystem. It features ready-to-use search spaces for many popular
+machine learning algorithms. The search spaces are from scientific articles and
+work for a wide range of data sets.")
+ (license license:lgpl3)))
+
(define-public r-paradox
(package
(name "r-paradox")
--
2.41.0
M
[PATCH 8/9] gnu: Add r-mlr3viz.
(address . 70827@debbugs.gnu.org)
23421585e25455a72fb83e2e48bdbbed1efda140.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3viz): New variable.
Change-Id: Iedca442886ebeb09d26cfa44290192c582aeeef3
---
gnu/packages/cran.scm | 28 ++++++++++++++++++++++++++++
1 file changed, 28 insertions(+)
Toggle diff (41 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 6fcf0eb10d..74c741d754 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38059,6 +38059,34 @@ (define-public r-mlr3tuningspaces
work for a wide range of data sets.")
(license license:lgpl3)))
+(define-public r-mlr3viz
+ (package
+ (name "r-mlr3viz")
+ (version "0.8.0")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3viz" version))
+ (sha256
+ (base32 "1m2f54yqhk1bd4c30vd1z509yblz6y4i8qkwhg73aa1sflnsycvf"))))
+ (properties `((upstream-name . "mlr3viz")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-checkmate
+ r-data-table
+ r-ggplot2
+ r-mlr3misc
+ r-scales
+ r-viridis))
+ (home-page "https://mlr3viz.mlr-org.com")
+ (synopsis "Visualizations for mlr3")
+ (description
+ "This package offers features plots for mlr3 objects such as tasks, learners,
+predictions, benchmark results, tuning instances and filters via the
+@code{autoplot()} generic of ggplot2. The mlr3viz package draws plots with
+the viridis color palette and applies the minimal theme. Visualizations include
+barplots, boxplots, histograms, ROC curves, and precision-recall curves.")
+ (license license:lgpl3)))
+
(define-public r-paradox
(package
(name "r-paradox")
--
2.41.0
M
[PATCH 9/9] gnu: Add r-mlr3verse.
(address . 70827@debbugs.gnu.org)
d4c5a2bd77f3baf068ee0e5e952bcc49228a16ed.1715130172.git.madalinionel.patrascu@mdc-berlin.de
* gnu/packages/cran.scm (r-mlr3verse): New variable.
Change-Id: I52c01fffd13c72b599ae5bc9ff809daea11eaa59
---
gnu/packages/cran.scm | 36 ++++++++++++++++++++++++++++++++++++
1 file changed, 36 insertions(+)
Toggle diff (49 lines)
diff --git a/gnu/packages/cran.scm b/gnu/packages/cran.scm
index 74c741d754..a9db22589a 100644
--- a/gnu/packages/cran.scm
+++ b/gnu/packages/cran.scm
@@ -38059,6 +38059,42 @@ (define-public r-mlr3tuningspaces
work for a wide range of data sets.")
(license license:lgpl3)))
+(define-public r-mlr3verse
+ (package
+ (name "r-mlr3verse")
+ (version "0.2.8")
+ (source
+ (origin
+ (method url-fetch)
+ (uri (cran-uri "mlr3verse" version))
+ (sha256
+ (base32 "0ld4vch1qdq3gh8vhj38s2wz7acn5z7f8hxmnwnrq22g44gckd8s"))))
+ (properties `((upstream-name . "mlr3verse")))
+ (build-system r-build-system)
+ (propagated-inputs (list r-bbotk
+ r-data-table
+ r-mlr3
+ r-mlr3cluster
+ r-mlr3data
+ r-mlr3filters
+ r-mlr3fselect
+ r-mlr3hyperband
+ r-mlr3learners
+ r-mlr3mbo
+ r-mlr3misc
+ r-mlr3pipelines
+ r-mlr3tuning
+ r-mlr3tuningspaces
+ r-mlr3viz
+ r-paradox))
+ (home-page "https://mlr3verse.mlr-org.com")
+ (synopsis "Easily install and load of the mlr3 package family")
+ (description
+ "The mlr3 package family is a set of packages for machine-learning purposes
+built in a modular fashion. This wrapper package is aimed to simplify the
+installation and loading of the core mlr3 packages.")
+ (license license:lgpl3)))
+
(define-public r-mlr3viz
(package
(name "r-mlr3viz")
--
2.41.0
R
Re: [bug#70827] [PATCH 1/9] gnu: Add r-mlr3cluster.
(name . M?d?lin Ionel Patra?cu)(address . madalinionel.patrascu@mdc-berlin.de)(address . 70827-done@debbugs.gnu.org)
87frusig7t.fsf@elephly.net
Applied all, thank you!
--
Ricardo
Closed
?